HOGENOM is a phylogenomic database providing families of homologous genes and associated phylogenetic trees (and sequence alignments) for a wide set sequenced organisms.
Release
Release number 7November 2019
Contents
| more than 10 000 organisms ( 12 326 bacteria, 593 eukarya, 224 archaea ) |
| more than 50 000 000 genes |
| more than 1 000 000 gene families |
| Phylum | species | organisms |
|---|---|---|
| Eukaryota | 464 | (593) |
| Archaea | 182 | (224) |
| Cyanobacteria | 80 | (103) |
| Betaproteobacteria | 166 | (356) |
| Alphaproteobacteria | 286 | (553) |
| Gammaproteobacteria | 521 | (2741) |
| Delta/epsilon subdivisions | 111 | (231) |
| Firmicutes | 565 | (5232) |
| Bacteroidetes/chlorobi group /td> | 236 | (317) |
| Actinobacteria | 365 | (2164) |
| Spirochaetes | 52 | (108) |
| Tenericutes | 58 | (108 ) |
| Other phyla | 166 | (333) |
Query HOGENOM
sequence identifier examples:
| Uniprot ID : | Q53XC5_HUMAN MLH1_HUMAN |
| Uniprot Accession : | Q6ZU67 |
| Hogenom ID : | MOUSE_15.PE1165 HOMO_3.PE998 |
HOGENOM organisation
HOGENOM is divided into 13 phylum-specific databases and 1 core database.