HOGENOM is a phylogenomic database providing families of homologous genes and associated phylogenetic trees (and sequence alignments) for a wide set sequenced organisms.
Release
Release number 7November 2019
Contents
more than 10 000 organisms ( 12 326 bacteria, 593 eukarya, 224 archaea ) |
more than 50 000 000 genes |
more than 1 000 000 gene families |
Phylum | species | organisms |
---|---|---|
Eukaryota | 464 | (593) |
Archaea | 182 | (224) |
Cyanobacteria | 80 | (103) |
Betaproteobacteria | 166 | (356) |
Alphaproteobacteria | 286 | (553) |
Gammaproteobacteria | 521 | (2741) |
Delta/epsilon subdivisions | 111 | (231) |
Firmicutes | 565 | (5232) |
Bacteroidetes/chlorobi group /td> | 236 | (317) |
Actinobacteria | 365 | (2164) |
Spirochaetes | 52 | (108) |
Tenericutes | 58 | (108 ) |
Other phyla | 166 | (333) |
Query HOGENOM
sequence identifier examples:
Uniprot ID : | Q53XC5_HUMAN MLH1_HUMAN |
Uniprot Accession : | Q6ZU67 |
Hogenom ID : | MOUSE_15.PE1165 HOMO_3.PE998 |
HOGENOM organisation
HOGENOM is divided into 13 phylum-specific databases and 1 core database.